PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006503001
Common NameGSBRNA2T00006503001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 363aa    MW: 39886.4 Da    PI: 9.3858
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006503001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-155195147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +W++ E+e++++a++++G   W+ I +++g ++t+ q++s+ qk+
  GSBRNA2T00006503001 51 REKWSEAEHERFLEAINLYGRA-WRQIQEHIG-TKTAVQIRSHAQKF 95
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.58E-1545100IPR009057Homeodomain-like
PROSITE profilePS5129419.93346100IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-94798IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-154998IPR006447Myb domain, plants
SMARTSM007171.6E-125098IPR001005SANT/Myb domain
PfamPF002493.2E-135194IPR001005SANT/Myb domain
CDDcd001671.38E-95396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAAPDRSEDV SSNVENGGCN SNEGTTNHET SSDRIANAAK VRKPYTVTKQ REKWSEAEHE  60
RFLEAINLYG RAWRQIQEHI GTKTAVQIRS HAQKFFSKVA READSGSDGS VQTVVIPPPR  120
PKRKPTHPYP RKSPVPYSQS PSSAMEKGTK SPTSVLSPFD SDDQTNRCSS PNSCTKDDAV  180
TGSRPTSSIM LFGKIVLVGG ESHKTSSSRE DGVDHKSMTG QDSRHVDTVL SLGVWDTSCT  240
GSNAFGSVTE VSENLEKSAE ARKRLTSLEK QEPCYRANGF RPYKRCLSER EVTSSLSLVA  300
SEEEGSRRRA RSLDLSKVMD QKRVKINQLN KPTAKAQVGM DVWVGFEPVF TGSGFFKSCI  360
FL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.192590.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006503001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637873.10.0PREDICTED: protein REVEILLE 7 isoform X1
RefseqXP_013723371.10.0protein REVEILLE 7-like
SwissprotB3H5A81e-144RVE7_ARATH; Protein REVEILLE 7
TrEMBLA0A078G1M50.0A0A078G1M5_BRANA; BnaC05g14070D protein
STRINGBo5g025310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-137MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]