PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006662001
Common NameGSBRNA2T00006662001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 213aa    MW: 24399 Da    PI: 5.4276
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006662001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70267.25.5e-21278096150
               DUF702  96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150
                          +   le s+lP+e+  + vfrc+rvss+dd++ee+aYqtav+igG+vfkGiLydq
  GSBRNA2T00006662001  27 NLYGLESSHLPPEIL-PTVFRCTRVSSIDDEDEEYAYQTAVNIGGYVFKGILYDQ 80 
                          345678889****96.78************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037595.8E-7129IPR005512PRONE domain
PfamPF051423.2E-183180IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016247.7E-214280IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043547Biological Processpositive regulation of GTPase activity
GO:0005089Molecular FunctionRho guanyl-nucleotide exchange factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAKRMLGEDM SGSAEGVCPA ISNAITNLYG LESSHLPPEI LPTVFRCTRV SSIDDEDEEY  60
AYQTAVNIGG YVFKGILYDQ EILIPHELTF LRFTLWQRLR SILLSPLRTK SGLKRERESI  120
IPKRGKGSIG TGWFVNNYPT RNLQFGMYKI ETVNGEISLE PENMGMKEWL KENVKEEEYV  180
VMKAEVEVLE EMMRSKTIKW WISFSWNASH GY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.145571e-109seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006662001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895588e-52AC189558.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006P24, complete sequence.
GenBankGU2052688e-52GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078G1F91e-155A0A078G1F9_BRANA; BnaC01g31760D protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.26e-26SHI-related sequence 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]