PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00006750001

Common Name

GSBRNA2T00006750001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 170aa MW: 18770.8 Da PI: 4.0245

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00006750001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	65.9	9.2e-21	105	153	2	50
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvs 50 +fqrlw+e+Dei++LqG+idfk++tg sp+dd++a y+++kksisf+ GSBRNA2T00006750001 105 AFQRLWTEDDEIAVLQGMIDFKKDTGNSPYDDTNAYYDYIKKSISFEEF 153 69*******************************************9855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-14	106	157	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MTKKRNPLEN PPAASSSDDD DDEADSSAGE EEEEVNDSSS EEEEEEDQPN PPPSSSATDS 60 ESDTKKDKSP PPATKPGTKR PSEGTSKEAN SKRAKIGEDS KKPAAFQRLW TEDDEIAVLQ 120 GMIDFKKDTG NSPYDDTNAY YDYIKKSISF EEFEEEVYGQ REAFFHQAS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13056	4e-91	microspore\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00006750001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105150.1	5e-68	PREDICTED: probable transcription factor At1g61730
Swissprot	Q9SYA9	2e-35	STKLD_ARATH; Probable transcription factor At1g61730
TrEMBL	A0A078ITC8	1e-116	A0A078ITC8_BRANA; BnaA01g36220D protein
STRING	Bra031402.1-P	2e-67	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-25	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]