PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007178001
Common NameGSBRNA2T00007178001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 598aa    MW: 68165.9 Da    PI: 7.6312
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007178001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.3e-1596177285
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfdql 85 
                          W+ +evlaL+++r+ +e+++ +       We  s+k++e gf+rsp++Ckek+e+ ++ry + +++ ++++    +++ ++++f+++
  GSBRNA2T00007178001  96 WCSDEVLALLRFRSTVENWFPEF-----TWELTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNDHHisnYNNKGNYRMFSEV 177
                          ********************998.....9*******************************999888887732223344466666665 PP
2trihelix102.82.6e-32450536186
             trihelix   1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+++evlaLi++rr+++  +   +++++ plWe++skkm e g++rs+k+Ckekwen+nk++kk+k+ +kkr + +s+tcpyf+ql+
  GSBRNA2T00007178001 450 RWPRDEVLALINIRRSINGISLssSSSKAVPLWERISKKMLESGYKRSSKRCKEKWENINKYFKKTKDVNKKR-PLDSRTCPYFHQLT 536
                          8**************998755411467889******************************************8.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1094160No hitNo description
PROSITE profilePS500905.48295147IPR017877Myb-like domain
PfamPF138372.8E-20449537No hitNo description
CDDcd122038.22E-24449516No hitNo description
PROSITE profilePS500907.352450509IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MFDGGVPEQI DQFIASPQPP PLLPPHQPAT ERSLPFPVSF ASFNSNQQAQ HMLSLDSGKI  60
IHHQHHHGIK DGGVSSEWIG HTDHDGHNHR HFHHPWCSDE VLALLRFRST VENWFPEFTW  120
ELTSRKLAEV GFKRSPQECK EKFEEEERRY FNSNNNTNDH HISNYNNKGN YRMFSEVEEF  180
YHHGHNDDQH VSSEVGDNQN KRNNSLEGKE NVEEMGHNLL EEGKIDHQGQ SQVEESSMGN  240
KINPVDNVRN EDGAKSSSSS SLMMIMRDKK KRKRKKKKER FGVLKGFCEG LVRNMIVQQE  300
EMHRKLLEDM VKKEEEKMAR EEAWKTQEME RLNKEVETRA NEQAMASDRN TSIIKFISKF  360
TGDNHDYGNG TVQSPSPSQD SSSLVLPKTQ GRRKCQTSSS LLPQALTPHY PISLQTNDIP  420
LEPISTETLK TKTQNRKPPI SDEKSDTGKR WPRDEVLALI NIRRSINGIS LSSSSSKAVP  480
LWERISKKML ESGYKRSSKR CKEKWENINK YFKKTKDVNK KRPLDSRTCP YFHQLTALYS  540
QPSTGTTTTA TDTSTAELET RVGSGDPDDF PAVMHVDANG AGEKSNVQFS GFDLALP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274KKRKRK
2269276KKRKRKKK
3269277KKRKRKKKK
4270278KRKRKKKKE
5271275RKRKK
6271277RKRKKKK
7271278RKRKKKKE
8273278RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007178001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129840.10.0PREDICTED: trihelix transcription factor GTL2-like
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A078IRC50.0A0A078IRC5_BRANA; BnaAnng11490D protein
STRINGBra020607.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]