PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007212001
Common NameGSBRNA2T00007212001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 418aa    MW: 44862.4 Da    PI: 5.0198
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007212001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31209267259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  GSBRNA2T00007212001 209 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 267
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-32200269IPR003657WRKY domain
PROSITE profilePS5081133.361203269IPR003657WRKY domain
SuperFamilySSF1182909.94E-27206269IPR003657WRKY domain
SMARTSM007741.5E-38208268IPR003657WRKY domain
PfamPF031063.6E-26210267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MCSVSESLDM DNFQGDLTDV VRGIGSGHVS SSTGPSEGPS PSSLSPPPIS DVPSVASCQI  60
NPFGDPFVSM TDPLFNLTAN KSNNSFEVFP EVSEDDHIKS KCSVFPRIQI SQSNIIQDAS  120
KCSSQAMAVS SAVAAASPWG MINVVGTNSP RNCSMVDNNN NTSSSSQIQI SSPRNLGIKK  180
RKGQGKKVVC IPAPAAINSR RSSGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC  240
PARKQVERSR TDPNMLVITY TSEHNHPWPT QRNALAGSTR SSISSSSNPS SKSLTSIATA  300
ITSSSSRVSQ NKDEPNKSHL ASSSTPPSPY VAAAVKEEDV EEGENKMEFD NDVDDTYRPE  360
FQHQPEGFFA DLDELEEDSL TMLLSQGFSG GGGNLENKTT IPDVFSDFFD DDCSRSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24186270680Disease resistance protein RRS1
5w3x_D3e-24186270680Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172181PRNLGIKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.291090.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007212001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121670.0FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302832.10.0probable WRKY transcription factor 35
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A078INA10.0A0A078INA1_BRANA; BnaCnng22580D protein
STRINGBo4g039260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-159WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]