PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007305001
Common NameGSBRNA2T00007305001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 334aa    MW: 38549.5 Da    PI: 6.8382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007305001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-05236259123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+Cp+C+ +F ++  +  Hi++ H
  GSBRNA2T00007305001 236 YTCPKCKDVFDTSQKFAAHISSvH 259
                          9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.203236264IPR007087Zinc finger, C2H2
PROSITE patternPS000280238259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MYSIPNGLNS YGDNTMNLHD SVPTQMNSSF GDPETKMFRS MFTTSVITNH HGLFSSSHAS  60
NCYRDSSSFG FNNSHAAYQM RTNMVSDVVD YFPINHNPQV SQVSITQTIT RRYSVIVPTR  120
SLITAQNEYE RAMNPNISYP SFYPQTFVDN QRTHPQTFVD NERNILNPTP LNTIYPRNVD  180
QFSFSPNHHH DQHVPHRRPV IKRRKFEEIF DGFDFEDNGV YDGRTHSLPY EKYGPYTCPK  240
CKDVFDTSQK FAAHISSVHY KNETVEEKAK RYSARNKRRF RKIDQTMHDE SQMIQPEERV  300
VEESGSNNNI ASGIEASQQQ LVVKEEPTYD VVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007305001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665300.10.0uncharacterized protein BNAANNG34870D
TrEMBLA0A078JYP10.0A0A078JYP1_BRANA; BnaAnng34870D protein
TrEMBLA0A397XTF80.0A0A397XTF8_BRACM; Uncharacterized protein
STRINGBra002447.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]