PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007507001
Common NameGSBRNA2T00007507001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 324aa    MW: 36283.2 Da    PI: 6.9962
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007507001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.49.3e-191965349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           n++ r+ tf kR++g+lKKA+ELS+LC+++v+v+i s +++  e+
  GSBRNA2T00007507001 19 MTNSTARNQTFRKRKTGLLKKANELSTLCGVKVCVVINSCDNTETEF 65
                         6799***********************************99987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-20968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.689969IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-101131IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-2212103IPR002100Transcription factor, MADS-box
CDDcd002668.70E-261391No hitNo description
PfamPF003193.7E-181961IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-103146IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-104667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MIPKKVIRPA YGRIKIEPMT NSTARNQTFR KRKTGLLKKA NELSTLCGVK VCVVINSCDN  60
TETEFWPSRE GAEAVHSAFM GVLPEERCKK MYDQERHLEE RIQKGQAKAM RLQAENREIE  120
LREVMFDLFK GETLKPHHYD DPCFIGELNH FIGDYVKNLS HRIEFLEANG EPVPPNVAAT  180
DASGPVVGDA NPFVVGTEGL NHFNTKLLLT FMIRLSPCFM VRARPMFYGS NQDMYTGLNH  240
DQGQSSNQYP NSNQSFVGLL MGQPQQMSDG QDPATVASMD DKNNGYYQLP ITSQMLLTTT  300
TAAAADLSGH RINNGWLTRF GLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007507001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130038.20.0PREDICTED: agamous-like MADS-box protein AGL92
TrEMBLA0A078JYS00.0A0A078JYS0_BRANA; BnaAnng35010D protein
STRINGBra020552.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.11e-38M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]