PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007680001
Common NameGSBRNA2T00007680001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 166aa    MW: 18603.3 Da    PI: 4.4235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007680001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000612183955
                         TCHHHHHHHHHHHHHHH CS
                  HLH 39 sKaeiLekAveYIksLq 55
                         +Ka+i + A+ YI+ Lq
  GSBRNA2T00007680001  2 DKASIIKDAISYIQGLQ 18
                         8***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-6134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDKASIIKDA ISYIQGLQYE ESKLEAEIRE LESTPKSSLS FSKDFDRDLL VPVTSKKMKQ  60
LDSGPSRSLI EVLDLKVTFM GERTVVVNVT CNKRTDTMVK LCEVFESLNL KIITSNLNSF  120
SGMIFNTVFI EAEEEEQEVV RLKIETGIGA YNETQSPTLS IDSLY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007680001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3187210.0AK318721.1 Arabidopsis thaliana AT5G57140 mRNA, complete cds, clone: RAFL07-57-A05.
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
GenBankBT0244720.0BT024472.1 Arabidopsis thaliana At5g57150 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613139.11e-115PREDICTED: transcription factor bHLH35 isoform X1
RefseqXP_013712703.11e-115transcription factor bHLH35-like
SwissprotQ2HIV91e-107BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A078IUP31e-115A0A078IUP3_BRANA; BnaC09g53380D protein
TrEMBLA0A0D3EC171e-114A0A0D3EC17_BRAOL; Uncharacterized protein
STRINGBo9g130890.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-103bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]