PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007681001
Common NameGSBRNA2T00065627001, LOC106371505
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 81aa    MW: 9177.87 Da    PI: 4.1079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007681001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.1e-085678729
                         HHHHHHHHHHHHHHHHHHCTSCC CS
                  HLH  7 erErrRRdriNsafeeLrellPk 29
                           Er+RR+++N++++ Lr+++P+
  GSBRNA2T00007681001 56 VSERNRRQKLNQRLFALRSVVPN 78
                         67********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-74179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.8644980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-65278No hitNo description
PfamPF000103.0E-55678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-65679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MDNVDQEFNN YWETNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007681001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866662e-87AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712821.11e-52transcription factor bHLH35-like
SwissprotQ2HIV92e-46BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A078HIG84e-51A0A078HIG8_BRANA; BnaA10g11180D protein
TrEMBLA0A078ITI34e-51A0A078ITI3_BRANA; BnaC09g53390D protein
TrEMBLA0A0D3EC174e-51A0A0D3EC17_BRAOL; Uncharacterized protein
TrEMBLA0A397XJV04e-51A0A397XJV0_BRACM; Uncharacterized protein
TrEMBLA0A3P6EEA34e-51A0A3P6EEA3_BRAOL; Uncharacterized protein
TrEMBLM4CEX44e-51M4CEX4_BRARP; Uncharacterized protein
STRINGBra002756.1-P7e-52(Brassica rapa)
STRINGBo9g130890.17e-52(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-34bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]