PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007862001
Common NameGSBRNA2T00007862001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 259aa    MW: 29576.8 Da    PI: 8.3538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007862001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-071435122
                         TSSS-HHHHHHHHHHHHHTTTT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg 22
                         +g+WT+eEde+l+ ++k +G +
  GSBRNA2T00007862001 14 KGAWTKEEDERLIAYIKAHGED 35
                         79******************87 PP
2Myb_DNA-binding58.31.7e-185296147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  GSBRNA2T00007862001 52 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 96
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-8535IPR009057Homeodomain-like
PROSITE profilePS500906.597942IPR017877Myb-like domain
SuperFamilySSF466891.76E-211393IPR009057Homeodomain-like
SMARTSM007171.11348IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-83859IPR009057Homeodomain-like
PROSITE profilePS5129428.82147101IPR017930Myb domain
SMARTSM007172.5E-175199IPR001005SANT/Myb domain
PfamPF002491.0E-165296IPR001005SANT/Myb domain
CDDcd001671.73E-115497No hitNo description
Gene3DG3DSA:1.10.10.602.7E-246098IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAYIK AHGEDCCCRL RWINYLRPDL KRGNFTEDED  60
ELIIKLHSLL GNKWSLIAGR LPGRTDNEIK NYWNTHIRRK LINRGIDPTT HRPVQESSSA  120
SQDSKPTQLA EAITSNNTIN ISFTNTPKME STSCFQVKPE KISMLTFKEE KDEFLIEEKL  180
PDLNLELRIS LPDVVEGKST RERCFKCSLG MINGMECRCG SMRCDVVGGS SGSTGKGREN  240
SILRFWQETS ILRFWRKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251310126128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.59371e-171leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007862001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765490.0KR076549.1 Brassica napus MYB transcription factor 4-1 (MYB4-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629672.11e-161PREDICTED: transcription repressor MYB4
RefseqXP_013652821.11e-161transcription repressor MYB4-like
RefseqXP_013685716.11e-161transcription repressor MYB4-like
SwissprotQ9SZP11e-134MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A078IS440.0A0A078IS44_BRANA; BnaCnng23360D protein
STRINGBo3g149450.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-125myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  5. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  8. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]