PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007983001
Common NameGSBRNA2T00007983001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 307aa    MW: 33782.1 Da    PI: 9.4417
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007983001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-124387147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  GSBRNA2T00007983001 43 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 87
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.98E-163793IPR009057Homeodomain-like
PROSITE profilePS5129413.8763892IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-64093IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-184190IPR006447Myb domain, plants
SMARTSM007179.6E-104290IPR001005SANT/Myb domain
PfamPF002495.8E-104387IPR001005SANT/Myb domain
CDDcd001671.21E-74588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MNPADGSLLD PNGTMTVPAI GPLTSSEDLS KKIRKPYTIS KSRESWTEPE HDKFLEALQL  60
FDRDWKKIEA FIGSKTVIQI RSHAQKYFLK VQKSGTAEHL PPPRPKRKAA HPYPQKAQKN  120
VQPQVPGSFK STAEPNDPSY MFRPESSSML MTSPPPTAAA AAPWTNNVQT ISFTPLPKET  180
AGAGANNNCS SSSENTPRPR SNKDTNVQAN PGHSLRVLPD FGQVYSFIGS VFDPYASNHL  240
QKLKKMDPID VETVLLLMRN LSINLSSPDF EDHRRLLSSY DIGSETAADH GGVFKTLNKE  300
PPEIST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.271601e-103root| seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007983001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5503030.0AY550303.1 Arabidopsis thaliana MYB transcription factor (At5g52660) mRNA, complete cds.
GenBankBT0020020.0BT002002.1 Arabidopsis thaliana putative protein (At5g52660) mRNA, complete cds.
GenBankBT0258820.0BT025882.1 Arabidopsis thaliana At5g52660 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119808.10.0PREDICTED: protein REVEILLE 6 isoform X1
RefseqXP_013699049.10.0protein REVEILLE 6-like isoform X1
SwissprotQ8H0W30.0RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A078IS800.0A0A078IS80_BRANA; BnaA10g28420D protein
TrEMBLA0A397XKH60.0A0A397XKH6_BRACM; Uncharacterized protein
STRINGBra003117.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-153MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]