PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00008047001

Common Name

GSBRNA2T00008047001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 315aa MW: 35146.3 Da PI: 7.3406

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00008047001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	42	1.6e-13	241	265	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+y d+C+FaHg GSBRNA2T00008047001 241 KTELCNKWQQTGACPYADNCQFAHG 265 9***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	9.1E-18	234	272	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.3E-10	237	271	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.469	239	267	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-8	239	266	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.8E-10	241	265	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.2E-9	273	308	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-12	273	306	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-5	277	304	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.972	277	305	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0051511	Biological Process	negative regulation of unidimensional cell growth
GO:1901347	Biological Process	negative regulation of secondary cell wall biogenesis
GO:0003729	Molecular Function	mRNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MEKVASTVTD LACVTALNSP PPPLSPQSDK SVTKQHQEDF AASFASLYNS IFSPESQFPD 60 SLSLSPSPPY SSSSPPARVD TATEHRLRQA SLILEYDELN EHYEVCLSRL QSLMTELDSL 120 HRENDALRQE NVDLLKLIHI STSSSSSSVS PPHVRNRQQI SDFGSQARRR SDPERNSLPK 180 SISVRSPGYL KMMNQGSHGY GGANRQTSQL GSDSVTQKVC VPTKGERDAL ELEVYRQGMT 240 KTELCNKWQQ TGACPYADNC QFAHGIDELR PVIRHPRYKT EVCRMIVTGA TCPYGHRCHF 300 RHSLTEQERM LLTH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1rgo_A	1e-20	241	306	5	70	Butyrate response factor 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00008047001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013699289.1	0.0	zinc finger CCCH domain-containing protein 14-like isoform X1
Refseq	XP_013699290.1	0.0	zinc finger CCCH domain-containing protein 14-like isoform X1
Refseq	XP_022560292.1	0.0	zinc finger CCCH domain-containing protein 14-like isoform X1
Swissprot	Q9C9N3	1e-133	C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBL	A0A078IPB9	0.0	A0A078IPB9_BRANA; BnaC06g27780D protein
STRING	Bra004189.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10623	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	1e-132	C3H family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]