PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00008218001

Common Name

GSBRNA2T00008218001, LOC106427438

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 195aa MW: 21231.4 Da PI: 8.6953

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00008218001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.4e-39	31	90	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC s ntkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg+rkn ++ GSBRNA2T00008218001 31 EQEQLNCPRCASPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGTRKNSSK 90 57899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-32	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	35	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-24	37	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MQEDMTSAAA YYPHQSMIMT AKQQQQPELP EQEQLNCPRC ASPNTKFCYY NNYNLSQPRH 60 FCKNCRRYWT KGGSLRNIPV GGGTRKNSSK RSSVGSSSSS SSSSSPKSKT VAVSDQESRN 120 TGNSGQEMDP TRMLYGLPVG DPSGGSFSSL LVSNMQQIRG VNYETGSGWY PGMELGLGSG 180 IRRNDDAALT DEQN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.4090	0.0	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00008218001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-33	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625262.1	1e-143	PREDICTED: dof zinc finger protein DOF1.7-like
Refseq	XP_013723626.1	1e-143	dof zinc finger protein DOF1.7
Swissprot	O82155	8e-86	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A078IVE4	1e-141	A0A078IVE4_BRANA; BnaC03g77910D protein
TrEMBL	A0A0D3BMQ3	1e-141	A0A0D3BMQ3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6B479	1e-141	A0A3P6B479_BRAOL; Uncharacterized protein
STRING	Bo3g181400.1	1e-142	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-71	DOF zinc finger protein 1

Link Out ? help Back to Top
Entrez Gene	106427438

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]