PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00008361001

Common Name

GSBRNA2T00008361001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 287aa MW: 31309.7 Da PI: 6.0426

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00008361001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.6e-14	4	41	6	45
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + Ede ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ GSBRNA2T00008361001 4 EVEDEAIITAHAIHGNK-WSIIAKLLP-GRTDNAIKNHWN 41 56*************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.6E-9	1	46	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.752	1	48	IPR017930	Myb domain
CDD	cd00167	7.77E-11	4	44	No hit	No description
Pfam	PF00249	7.5E-12	4	41	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-17	4	45	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.87E-12	5	50	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
VYKEVEDEAI ITAHAIHGNK WSIIAKLLPG RTDNAIKNHW NATLRRRCTD FETPTTNTAT 60 RNLVLHDSRL DRTMNTFASS EETLSSGGGG GGGGHVTTPL VSSDGKEATS MEISEEQCAD 120 KANEEDISRQ ECNNDPPTLF RPVAKLSSFN PYNHMEGSST PHTLNQNKFQ SCKQDTAMLR 180 LLEGAYSERF VPQKCGSGCC SVSQKDSLLG PEFVDYLDPP TFPSYELAAI ATDISSLAWL 240 RSGLESSSVR TMEEAAGRLR PQGTRGHRDH CLVSEQGKSR TNVLST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-13	2	48	62	108	B-MYB
1mbj_A	5e-14	2	47	6	51	MYB PROTO-ONCOGENE PROTEIN
1mbk_A	5e-14	2	47	6	51	MYB PROTO-ONCOGENE PROTEIN
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.22790	1e-158	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00008361001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ694828	0.0	HQ694828.1 Brassica rapa subsp. chinensis transcription factor MYB1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009123435.1	0.0	PREDICTED: myb protein-like
Swissprot	Q42575	1e-142	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A078JZB5	0.0	A0A078JZB5_BRANA; BnaUnng04070D protein (Fragment)
STRING	Bra034057.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-143	myb domain protein 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]