PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008395001
Common NameGSBRNA2T00008395001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 360aa    MW: 39073.6 Da    PI: 8.4949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008395001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13117161347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
  GSBRNA2T00008395001 117 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 161
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.673110166IPR017930Myb domain
SuperFamilySSF466891.05E-16112165IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-18113164IPR006447Myb domain, plants
SMARTSM007171.7E-10114164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-11116160IPR009057Homeodomain-like
CDDcd001672.84E-9117162No hitNo description
PfamPF002494.4E-11117161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTRRCSHCSY NGHNSRTCPT RSSASSSSSS AVKLFGVRLT DGSIIKKSAS MGNLSALAVH  60
HRLSPSSPLA TGNHNDSPLS DHGRYSSQDN GGYLSDDPGH GSGSIHHRRV ERKRGVPWTE  120
EEHRLFLVGL QKLGKGDWRG ISRNYVTSRT PTQVASHAQK YFIRHTCSTR RKRRSSLFDM  180
VTDEMITDPS PTQEDQTLSK EPESKTFLPS LELKLNNATE SEAAPPQEQP EEAVEPPNGL  240
SPMLVPGSFF PPCFPVTYTI WLPATSTSLQ GTEPSLEVSA SFQQHQVLKP KPGFAKERSN  300
MDELVGMSQL SIAMETSHET ETPMSLKLIG EPSRPSAFHS NGSVSGSGLS KGSSAIQAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.258012e-67bud| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008395001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013749726.10.0transcription factor MYBS3-like
TrEMBLA0A078JTL40.0A0A078JTL4_BRANA; BnaAnng35540D protein
STRINGBra027170.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-167MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]