PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00008396001

Common Name

GSBRNA2T00008396001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 95aa MW: 10774.9 Da PI: 8.0719

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00008396001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	51	69	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cg+ F ksnL++H +++ GSBRNA2T00008396001 51 MCGQKFYAKSNLTTHKKKC 69 6****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
AGDDNVDRRS SHSNIPSQHS FEADLDPPTQ QRVRKLAERF STIEQQPFSC MCGQKFYAKS 60 NLTTHKKKCL ASKEEVDEEE DLAWAQKKRR SGGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00008396001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF124226	2e-47	AF124226.2 Brassica rapa pollen-specific arabinogalacta protein BAN102 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013667064.1	6e-66	uncharacterized protein LOC106371520
TrEMBL	A0A078JVY2	1e-64	A0A078JVY2_BRANA; BnaCnng70350D protein (Fragment)
TrEMBL	A0A3P6GCT5	1e-64	A0A3P6GCT5_BRAOL; Uncharacterized protein (Fragment)

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]