PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008474001
Common NameGSBRNA2T00008474001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 136aa    MW: 15333.9 Da    PI: 8.9027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008474001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.5e-1118117182
                          EEEE-..-HHHHT.T-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHH CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkan 72 
                          f+k+l   dv  s +rl++p + + ++               ++ ++ +   +l d+ +++W v l+ +   g+  y l  GW++ vkan
  GSBRNA2T00008474001  18 FEKTLFETDVKPSqSRLSIPFHKLIRNdfltlaesriieediSNREKMGLGAVLVDQGSKKWGVFLKRWEMNGSwnYALVCGWNDVVKAN 107
                          677777777776557778887777777777777777777666444445567999************6644444448************** PP

                          T--TT-EEEE CS
                   B3  73 gLkegDfvvF 82 
                          gLk+gD++ +
  GSBRNA2T00008474001 108 GLKDGDSISL 117
                          ******9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037544.8E-432105IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.0E-2113132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-2013131IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-1317128No hitNo description
PROSITE profilePS5086311.9738134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MIQLLRNTKG AADPMLIFEK TLFETDVKPS QSRLSIPFHK LIRNDFLTLA ESRIIEEDIS  60
NREKMGLGAV LVDQGSKKWG VFLKRWEMNG SWNYALVCGW NDVVKANGLK DGDSISLWSF  120
RCRGVLCFAL VPLPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008474001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674137.11e-94B3 domain-containing protein At3g25182-like
SwissprotQ9LRX67e-61Y3485_ARATH; Putative B3 domain-containing protein At3g24850
TrEMBLA0A078ISV21e-94A0A078ISV2_BRANA; BnaA09g14220D protein
TrEMBLA0A397XU381e-94A0A397XU38_BRACM; Uncharacterized protein
STRINGBra027159.1-P3e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.14e-42B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]