PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008692001
Common NameGSBRNA2T00008692001, LOC106421900
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 227aa    MW: 25425.6 Da    PI: 5.3688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008692001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-2080129255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  GSBRNA2T00008692001  80 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAALKFKG 129
                          7********.**********93....36************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3379138IPR001471AP2/ERF domain
SMARTSM003809.4E-3980143IPR001471AP2/ERF domain
CDDcd000182.84E-3280138No hitNo description
PfamPF008473.7E-1480129IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2280138IPR016177DNA-binding domain
PROSITE profilePS5103224.80380137IPR001471AP2/ERF domain
PRINTSPR003671.1E-118192IPR001471AP2/ERF domain
PRINTSPR003671.1E-11103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MPFGGDEPEA KEEDEEDENL FPAFSARSQH DRRVMVLALT QVIGNQQSNS HDSPVYNPQD  60
LSKPVAPSHQ DQGNSMGRRH YRGVRQRPWG KWAAEIRDPQ KAARVWLGTF ETAESAALAY  120
DEAALKFKGS KAKLNFPERV NDISNDQLSN STYYSSNQIE PKNIPYYNQY YQDGNNTDML  180
RFSLTTSTTA ATTSSSSGGF SRPQEEQDYA RFWRFGDSSS SSKSGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2879141467ATERF1
3gcc_A2e-2879141467ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008692001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718191.11e-169ethylene-responsive transcription factor ERF114
SwissprotQ9FH541e-95EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A078IT241e-168A0A078IT24_BRANA; BnaCnng24520D protein
TrEMBLA0A3P6B6081e-168A0A3P6B608_BRAOL; Uncharacterized protein
STRINGBo3g109240.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-76ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]