PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00008745001

Common Name

GSBRNA2T00008745001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 287aa MW: 31137.6 Da PI: 11.0571

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00008745001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	19	41	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C + F ++ +L +H +t H GSBRNA2T00008745001 19 ECSLCQRIFFTPQDLITHTNTfH 41 7*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.037	18	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	20	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MNAGFGMRKD LTRVSNRLEC SLCQRIFFTP QDLITHTNTF HSNHHYSNFS SSAVAPALAL 60 GPAPAPATFR HYPNLNRNPN PTFPAMNRPD LNIYRSGPTD EQGRLLRGSL AMTPASTNVL 120 FGQQEKPKLM DLFPMMPSEG LRTLPLLSQL EERTPQDTAT EQGGAISSSI DLTLRLVVSV 180 VVAVVSVVVA VGMIIVNKER PITISRNRSF SRKAVAGSSV RVTSSADFLE NRSSRVVLNN 240 GRPSTTQWTQ FPPPSSSALA TNAAAPSRVP PDVTLEFLII GNGKRK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00008745001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189246	0.0	AC189246.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017P15, complete sequence.
GenBank	AC232437	0.0	AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118648.1	1e-127	PREDICTED: uncharacterized protein LOC103843651
TrEMBL	A0A078IUU6	0.0	A0A078IUU6_BRANA; BnaAnng12140D protein
STRING	Bra032510.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13551	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04445.1	1e-27	C2H2-like zinc finger protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]