PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008923001
Common NameGSBRNA2T00008923001, LOC106400307
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 305aa    MW: 34479 Da    PI: 7.3507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008923001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05100119120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C+k+F+r  n++ H+
  GSBRNA2T00008923001 100 FSCSVCNKTFNRFNNMQMHM 119
                          89*****************9 PP
2zf-C2H210.90.0014185208123
                          EEET.TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                          ++C  +C k+F  + + ++H +++
  GSBRNA2T00008923001 185 FRCRkKCEKTFAVRGDWRTHEKNC 208
                          89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-593122No hitNo description
PROSITE profilePS5015710.263100127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-6100119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4171206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MFNNNQYCIS GDEDSVVLRL GPPNQQYRNN YKSTSTKPST NHEIDHNLPL TNPNDVTVAL  60
HIGPPVSEKE TSGNHEGLTA RQGQYWIPSL SQILVGPTQF SCSVCNKTFN RFNNMQMHMW  120
GHGSQYRKGP ESLRGTKSSS SILRLPCYCC AEGCKNNIGH PRAKPLKDFR TLQTHYKRKH  180
GAKPFRCRKK CEKTFAVRGD WRTHEKNCGK VWFCVCGSDF KHKRSLKDHV RAFGDGHAAH  240
TVGDRVVSIG EGDGDDDDDD FMEEEDERDD DEEEDGNGES GRGEKNYGIR YEHFGRYGQI  300
SNDN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008923001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696133.10.0zinc finger protein WIP6
SwissprotQ9FX681e-176ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A078FYB70.0A0A078FYB7_BRANA; BnaC05g08940D protein
STRINGBo5g015200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-173C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]