PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009289001
Common NameGSBRNA2T00009289001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 462aa    MW: 50104.4 Da    PI: 6.7237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009289001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.5e-063523901154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  GSBRNA2T00009289001 352 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 390
                          5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.735341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0075347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-11351405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-6351395No hitNo description
Gene3DG3DSA:4.10.280.101.1E-9355399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSNESGGSAV FHDKLHHQDH HSLATDHHLQ  60
MIGLGLSSQS PVDQWNQSLL RGDSKAETSF GGMLQENLNL DATSNANANT TSSTTSYQLQ  120
ESDSSHHQAL WRDPHINNND FKPQLNMTSS NRGFFSDHPQ FSPHGSSSTD SSTVTCQGFS  180
IDNSTNTMYG TSTTPNSSSA MFHQHQGAGY NLAGSSEQQP SRNHQQSNLG YSQFGSSTGN  240
YDQIATALPS TWFLRSSPPK PHSPLRFSNN ATFWNPAATA GNVGPTQHDA SSNFFPSIQP  300
PQLHRPSFEE QPKSVSEIRD SSSSDVKRGG GDQPAAKRAK SEAASPSPAF KVRKEKMGDR  360
IAALQQLVSP FGKTDAASVL SEAIEYIKFL HQQVSALSTP YMKSGASLQH QQSDHPKELD  420
VSEEPDLRSR GLCLVPVSST FPVTHDTTVD FWTPTFGGTF R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009289001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652596.10.0transcription factor bHLH123-like isoform X1
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A078G2G80.0A0A078G2G8_BRANA; BnaA05g20270D protein
STRINGBra035761.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]