PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009540001
Common NameGSBRNA2T00009540001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 318aa    MW: 35111.8 Da    PI: 5.2507
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009540001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.6e-18222256135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  GSBRNA2T00009540001 222 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 256
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-811307IPR016679Transcription factor, GATA, plant
SMARTSM004018.0E-17216266IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.411216252IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-15218280No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14220254IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.10E-15221268No hitNo description
PROSITE patternPS003440222247IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15222256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEEEAHEFFH TEDHFAVDDL LVDFSNDDDE ENDVIADSYG ADTTTAVADS SNSSSFSNTA  60
GLHTFNGDVQ DGTSFSGDLC VPSDELAELE WLSNFVEDSF SAEHVQKLQL ISGYRTRPDS  120
KSEPGLKNLK SSSPVFTTDV SVPAKARSKR SRAAACNWAS RELPKEAFYD NPFTGETIIS  180
SLYLSPPSSP TPTAQLWKKL AGDASRRKKY FSTDAGADER RCLHCATDKT PQWRTGPMGP  240
KTLCNACGVR YKSGRLVPEY RPVASPTFVL TKHSNSHRKV MELRRQKEMT KSYGKDTAMI  300
LDVSSDGDDY LIHHNVV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009540001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728830.0AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111680.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697811e-154GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A078G4650.0A0A078G465_BRANA; GATA transcription factor
STRINGBra036555.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-127GATA transcription factor 12
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]