PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009542001
Common NameGSBRNA2T00009542001, LOC106364026
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 218aa    MW: 23817.6 Da    PI: 5.3337
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009542001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-183484155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  GSBRNA2T00009542001 34 PVYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 84
                         68*****888.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-133484IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-213593IPR016177DNA-binding domain
PROSITE profilePS5103223.5383592IPR001471AP2/ERF domain
SMARTSM003801.7E-353598IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-313593IPR001471AP2/ERF domain
CDDcd000186.80E-333694No hitNo description
PRINTSPR003674.9E-103647IPR001471AP2/ERF domain
PRINTSPR003674.9E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MIGLESTSMN SSTNSVSQES KRETKPVRDS GKHPVYRGVR KRSWGKWVSE IREPRKKSRI  60
WLGTFPSPEM AARAHDVAAL SIKGTSATLN FPDLVGSFPR PSSLSPRDIQ AAALKAAHME  120
IIMTTSQSSS SSSLTSSSSL ESLVSSSATG SEELEEIVEL PSLGSSYDGT TQLSKEFIFF  180
DSADFWVYPP HQLSEVDYEM IPGSLSQDWD LPGLFNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1832921172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.121100.0root
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009542001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728830.0AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBankAC1893210.0AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659127.11e-156ethylene-responsive transcription factor TINY
SwissprotQ391271e-101TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A078G2Z41e-155A0A078G2Z4_BRANA; BnaA09g04470D protein
STRINGBra036552.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-92ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]