PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009772001
Common NameGSBRNA2T00009772001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 425aa    MW: 47893.2 Da    PI: 4.4621
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009772001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.4e-08352407147
                          TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                          r+ WT+eE+  l+ +v+++  +      W++I ++ +    ++Rt+ ++k++w++ 
  GSBRNA2T00009772001 352 RLLWTPEEEYMLKVGVEKFSAEakkniPWRKILEMGQkvfhETRTPSDLKDKWRNM 407
                          677******************************9999*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd154890.0044875121No hitNo description
PROSITE profilePS500907.294347408IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.9E-9348415IPR009057Homeodomain-like
SuperFamilySSF466891.33E-9350409IPR009057Homeodomain-like
SMARTSM007172.2E-4351410IPR001005SANT/Myb domain
CDDcd116602.72E-10355408No hitNo description
PfamPF139214.6E-6355418No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTRSKSLPIR SSRKSLDPSP ASLPEEANQG VSNKRYPPQI EIGDDDVEIV TDTFDGRDKK  60
RHCVGTSEPL SLEACIVCET SDELVYRCCG ADCLLWFHEE CLNAEFGSGG EDPANPFCPY  120
CWFQILAVES IRLKEKAVGA EMAVFKYLDK EMRSKGQEDS VDTTDIVSDQ EVEVDEKCSD  180
ESRGEDMAAL VEETDQSEGG KENFEVCTDR VVDEEERVVT ENFLDDEDDE AAGDQTRGNA  240
DAGKERDVSP FLSMQESFSG REHDQVQQSE KRRRKRRLIL NAFDSDVSSN GSTNEPNGED  300
AVENITSLAL VVTSPPGMMK NHQREDSRTT KVDNSKTVRL DIPIFKMDQK RRLLWTPEEE  360
YMLKVGVEKF SAEAKKNIPW RKILEMGQKV FHETRTPSDL KDKWRNMTGA RLKNKQDSTT  420
VPGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269277EKRRRKRRL
2270276KRRRKRR
3270277KRRRKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009772001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893050.0AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111833.10.0PREDICTED: uncharacterized protein LOC103837245
TrEMBLA0A078G0650.0A0A078G065_BRANA; BnaA09g02910D protein
STRINGBra036179.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]