PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009781001
Common NameGSBRNA2T00009781001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 495aa    MW: 55437.1 Da    PI: 6.8922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009781001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.31.2e-1371224942374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +  L++cA+a+s++dl +a++++++l+ ++s +g+p+qRl ay++e+L a+la+s+s++yk+l+  +++   s e l+++++++ev+P++
  GSBRNA2T00009781001 122 RADLVSCAKAMSENDLMMANSMMEKLRLMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKSLNRCPEP--ASNELLSYMHILYEVCPYF 209
                          678************************************************************666665..49999************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf+++ aN aI ea+++e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp +RiTg+++++s   +   l+ +g+rLa++A++++vpfefn
  GSBRNA2T00009781001 210 KFGYMSANGAIAEAMKNENRVHIIDFQIGQGSQWVTLIQAFAERPGGPPWIRITGIDDMASAyaRGGGLSIVGNRLARLAKKFNVPFEFN 299
                          **********************************************************999899999*********************** PP

                 GRAS 180 vl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                           + v+ ++++++ ++L v++gEalaVn+++ lh+++desvs+e++rd++L++vk+lsPkvv++veqe+++n++ F+ rf+e+++yy a+f
  GSBRNA2T00009781001 300 SVsVSVSVAEVKHNNLGVRTGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKGLSPKVVTLVEQESNTNTAAFFPRFMETMDYYDAMF 389
                          *95555************************************************************************************ PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr++++ri+vE+++l+r++vn++acega+r+erhe l+kWr+r+++aGF+++pls  +++++k+ll++++++ yr+ee++g+l
  GSBRNA2T00009781001 390 ESIDVTLPRNHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTSYPLSPLVNSTIKRLLSNYSDK-YRLEERDGAL 478
                          *****************************************************************************55.********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW++r Lv+ +aW+
  GSBRNA2T00009781001 479 YLGWMKRDLVASCAWK 494
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.79295475IPR005202Transcription factor GRAS
PfamPF035144.2E-135122494IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MYKHPRQEIE AYSLPPVGKL RYVPVNNSRK RYCMLEPSSS SSPDSTVLVS NNNNNSTHEE  60
DTSASCVTDD FNDKIKELET AMMGPDSLDS ALYYNDSFVS TPCQVTNSWR STLEAVSRRD  120
LRADLVSCAK AMSENDLMMA NSMMEKLRLM VSVSGEPIQR LGAYLLEGLV AQLASSGSSI  180
YKSLNRCPEP ASNELLSYMH ILYEVCPYFK FGYMSANGAI AEAMKNENRV HIIDFQIGQG  240
SQWVTLIQAF AERPGGPPWI RITGIDDMAS AYARGGGLSI VGNRLARLAK KFNVPFEFNS  300
VSVSVSVAEV KHNNLGVRTG EALAVNFAFV LHHMPDESVS TENHRDRLLR MVKGLSPKVV  360
TLVEQESNTN TAAFFPRFME TMDYYDAMFE SIDVTLPRNH KQRINVEQHC LARDVVNIIA  420
CEGADRVERH ELLGKWRSRF GMAGFTSYPL SPLVNSTIKR LLSNYSDKYR LEERDGALYL  480
GWMKRDLVAS CAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-611254948375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009781001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893050.0AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660777.10.0scarecrow-like transcription factor PAT1
RefseqXP_013660778.10.0scarecrow-like transcription factor PAT1
RefseqXP_013660779.10.0scarecrow-like transcription factor PAT1
RefseqXP_013660780.10.0scarecrow-like transcription factor PAT1
RefseqXP_013660782.10.0scarecrow-like transcription factor PAT1
RefseqXP_013660783.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A078G3N50.0A0A078G3N5_BRANA; BnaA09g02850D protein
STRINGBo9g009260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]