PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00009833001

Common Name

GSBRNA2T00009833001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 288aa MW: 32711.9 Da PI: 9.8257

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00009833001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.1e-16	55	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +l ++v +G+ +W+ Ia++m+ gRt+k+c++rw++ GSBRNA2T00009833001 55 RGHWRVSEDSQLTELVSVHGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 100 899***************************.*********996 PP
2	Myb_DNA-binding	46	1.2e-14	108	151	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ eE+e+l+ a+ +G++ W+ Ia+ ++ gRt++ +k++w+ + GSBRNA2T00009833001 108 RAFSVEEEERLLAAHGAFGNK-WAMIAKIFN-GRTDNALKNHWHVL 151 689****************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.954	50	101	IPR017930	Myb domain
SMART	SM00717	2.6E-13	54	103	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-15	55	100	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.62E-27	55	148	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-24	56	108	IPR009057	Homeodomain-like
CDD	cd00167	8.93E-12	58	99	No hit	No description
PROSITE profile	PS51294	24.772	102	156	IPR017930	Myb domain
SMART	SM00717	3.3E-12	106	154	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-11	108	151	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-19	109	156	IPR009057	Homeodomain-like
CDD	cd00167	1.24E-8	109	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDISFFQAYP FDLPCSRAFN GDGENNAVEF SNKRMMVKVS DESKKKQRGS RVCSRGHWRV 60 SEDSQLTELV SVHGPQNWNH IAEKMQGRTG KSCRLRWFNQ LDPRINKRAF SVEEEERLLA 120 AHGAFGNKWA MIAKIFNGRT DNALKNHWHV LMARKLRQQS SSYTRRFNGS AHKPNADHTS 180 FNISPGLYDD EMNMEKNSWK MLKEGTTNMK AQYLQEEYRS PRMPMHGHYS TFSADSLALT 240 LHVSIQEPSS SLSSLSLPSS SAEYTMVATK PPAFIDFLGV GHQSLNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-28	55	156	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-28	55	156	4	105	C-Myb DNA-Binding Domain
1msf_C	2e-28	55	156	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00009833001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018509807.1	0.0	PREDICTED: transcription factor WER-like
TrEMBL	A0A078G3M1	0.0	A0A078G3M1_BRANA; BnaA09g02470D protein
STRING	Bo9g008750.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6300	18	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29020.2	1e-143	myb domain protein 110

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]