PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00010434001
Common NameGSBRNA2T00010434001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 656aa    MW: 74961.4 Da    PI: 9.2409
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00010434001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-09466508140
                          TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                          +++W++eE ++l +++ ++++g   +W+ I+ ++g+gRt +++
  GSBRNA2T00010434001 466 KQPWSKEEIDKLRKGIIKYPKGisrRWEVISDYIGTGRTVEEV 508
                          79*************************************9986 PP
2Myb_DNA-binding23.61.2e-07599642445
                          S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W+   +  lv+a k l ++   +W+++a+ ++ g+t  qck ++ 
  GSBRNA2T00010434001 599 WSSVQERALVQALKTLTKEtsqRWERVAAAVP-GKTMVQCKKKFA 642
                          *****************99*************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465659.81E-2091190IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.2E-20104210IPR001623DnaJ domain
SMARTSM002719.3E-17110186IPR001623DnaJ domain
PfamPF002262.9E-17111191IPR001623DnaJ domain
PROSITE profilePS5007618.288111194IPR001623DnaJ domain
CDDcd062571.56E-10113183IPR001623DnaJ domain
PRINTSPR006251.3E-9116134IPR001623DnaJ domain
PRINTSPR006251.3E-9134149IPR001623DnaJ domain
PRINTSPR006251.3E-9166186IPR001623DnaJ domain
PROSITE patternPS006360171190IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.604.0E-6460508IPR009057Homeodomain-like
PROSITE profilePS500906.435461516IPR017877Myb-like domain
SuperFamilySSF466891.2E-7462510IPR009057Homeodomain-like
SMARTSM007172.8E-6465518IPR001005SANT/Myb domain
PfamPF002492.0E-7466508IPR001005SANT/Myb domain
CDDcd001672.53E-5468508No hitNo description
SMARTSM007171.2E-6595647IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-7596643IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-4599644IPR009057Homeodomain-like
CDDcd001671.09E-4599645No hitNo description
PROSITE profilePS500906.818599645IPR017877Myb-like domain
PfamPF002493.8E-6599643IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MPSGRSDSAV KLITYSEELV DGKPFYEFSN SRPVKALNRE PAGHAFHSAA LKLLGCAEKP  60
SAGEGSNKKV GDDDKEEEYS FPSFNPYANN KANKKKKKKP GAQQQQDHQQ DHYALLGLRN  120
LRYLATEDQI KKSYREAALK HHPDKQHAAL LLAEETEEAK EAKKDEIDSR FRAIQEAYEV  180
LMDPTKRKIF DSTDEFDDED CSPQEFFKVF GPAFKRIAKL WAKTSQRVPD LGDENTKLKD  240
VEKFYSFWYG FKSLREFPDR GKHDLEKADS RQERRWMERE NAKKTAKDRK EDDVRIRNLV  300
DNAYRIDPRI AKREEEEEAK KQRKKEAKVM AEKKREEEAA EKEKMRKEEA KESAEKLKKE  360
KEKERKLLLK ERNRLRTLSA HVLAQRLLSK EDVENLCMSL NIQQLQSLCD TMGNKQGVEL  420
ANVIKDHEAN SKEKENEKAN SKEKECEKAN ADGDAEPTKL DNTRKKQPWS KEEIDKLRKG  480
IIKYPKGISR RWEVISDYIG TGRTVEEVLK ATKTVLLQKP DSAKAFDTFL EKRKPTVSIA  540
SPLSTREEEL GESLPMANNG EASGSSDADD HEANSKEKEN EKANSKEKES SGSSDADGWS  600
SVQERALVQA LKTLTKETSQ RWERVAAAVP GKTMVQCKKK FAELKELIRS KKAGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00010434001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022555208.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A078IU000.0A0A078IU00_BRANA; BnaCnng24780D protein
STRINGBo3g064180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-137DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]