PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00010620001
Common NameGSBRNA2T00010620001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 407aa    MW: 44897.8 Da    PI: 8.6391
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00010620001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-114873126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++++ C+f++rtG C yG++C+F+H+
  GSBRNA2T00010620001 48 PGERDCQFYLRTGLCGYGSTCRFNHP 73
                         5789*********************9 PP
2zf-CCCH36.67.6e-1292116327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C ++++tG CkyG++Ck++H++
  GSBRNA2T00010620001  92 QPDCEYYLKTGACKYGSTCKYHHPK 116
                          789********************96 PP
3zf-CCCH38.51.9e-12136161227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C++++rtGtC++G  CkF+H++
  GSBRNA2T00010620001 136 GEKPCPYYLRTGTCRFGVACKFHHPQ 161
                          689*********************97 PP
4zf-CCCH26.61e-08268288525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           Crff+ tGtCkyG+ Ck+ H
  GSBRNA2T00010620001 268 QCRFFMNTGTCKYGEHCKYTH 288
                          5******************88 PP
5zf-CCCH23.87.5e-08313337226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C     +G+Ck+G++C+F H+
  GSBRNA2T00010620001 313 GQPACGSVKSFGFCKFGPNCNFDHS 337
                          7789999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0614775IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-54774IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-65175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-45372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.80289117IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7133163IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939134162IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-6138161IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021263290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573263291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6266288IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-7267288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5269288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.62311339IPR000571Zinc finger, CCCH-type
SMARTSM003560.0067311338IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-6313337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MRPMSETHHV QSSTGSVRSS QKIEDAFRKM KVNDGNGVEQ PDPYPDRPGE RDCQFYLRTG  60
LCGYGSTCRF NHPTNLPQVM YYNEELPERI GQPDCEYYLK TGACKYGSTC KYHHPKDRNG  120
AEPVLFNVLN LPMRQGEKPC PYYLRTGTCR FGVACKFHHP QPDNGHSTAA AYGMPTFPSA  180
GLHHAGGLTM VPTYGTLPRP QLPQSYVMVS PSQGLMPPQS WATYMGASNS MYGVVKNQVY  240
YPGSSAPMHM GVTLSGGDLS ERSEQQQQCR FFMNTGTCKY GEHCKYTHLG VRVSPPPPPP  300
SFINPFVLPA RPGQPACGSV KSFGFCKFGP NCNFDHSVLP YPTGLPMPSS LPNPYPSHVP  360
SNYQRISPTP SRSGSKAMHN DKPDVKKEMP GTEKPEQVQD LSSPRS*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00010620001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119217.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A078IVE10.0A0A078IVE1_BRANA; BnaAnng12470D protein
STRINGBra015376.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]