PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00010742001

Common Name

GSBRNA2T00010742001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 246aa MW: 27105.3 Da PI: 8.5688

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00010742001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H GSBRNA2T00010742001 80 YQCKTCDRTFSSFQALGGHRASH 102 9***********99999998887 PP
2	zf-C2H2	12.1	0.00061	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F+ L H+r+H GSBRNA2T00010742001 144 HECRICGAEFTAGQALGGHMRRH 166 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.3E-11	79	104	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.77E-7	79	102	No hit	No description
PROSITE profile	PS50157	11.011	80	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.77E-7	139	166	No hit	No description
Pfam	PF13912	5.6E-10	143	168	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.91	144	168	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.18	144	166	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	146	166	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
RASSSASWSS NNNPTLKAEE DEEDLDIASC LILHSQGHSL PQLKIPNHET NNNNTYKFSS 60 RRFLETSSSN GGGKACHYVY QCKTCDRTFS SFQALGGHRA SHKKRKATSF YSNLDHLKKN 120 IYENDSLATT TTIYNNSKNR SLVHECRICG AEFTAGQALG GHMRRHRGAV VVAPTVTVAL 180 AAANTELSLS SMSFDQISTK RAKKMVVSLD LDLNLPAPED ENRTKQRDEP KCLVLSPPTL 240 VDCHY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00010742001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189388	0.0	AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620812.1	1e-148	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A078JW83	0.0	A0A078JW83_BRANA; BnaCnng71010D protein (Fragment)
STRING	Bo2g006530.1	1e-147	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-107	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]