PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00010831001

Common Name

GSBRNA2T00010831001, LOC106431535

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 326aa MW: 36343.4 Da PI: 6.6495

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00010831001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	257	302	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq GSBRNA2T00010831001 257 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 302 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.913	251	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-15	254	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-11	255	304	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-13	256	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-12	257	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	257	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDSNTQNHLY DPNHVSSSSG SGLLRFRSAP SSVLAASVDD NDETVFNSNE FENKSPASYA 60 ASPPPQQEPS SFLGLPPHYP KQSNGMMMMN TIGLDQFLSM NNHHHTRPAE SHLLRQSSSP 120 AGMFTNLSDQ NGYGYVGEEE EEEESPSLPN GLRRHSSLSS RPPSSLGMFS QIPEIDSESV 180 QFSHWNDPSS FIDNLSSLKR ETENDGKLFH GAQIMSHRLS LAKSASDVGS VDKYLQLQDS 240 VPCKVRAKRG CATHPRSIAE RVRRTKISER MRKLQELVPN MDKQTNTSDM LDLAVDYIKD 300 LQRQYKILNE NRANCKCVNK EKNLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00010831001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC155337	0.0	AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBank	AC189220	0.0	AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633734.1	0.0	PREDICTED: transcription factor bHLH130-like
Refseq	XP_013727781.1	0.0	transcription factor bHLH130
Swissprot	Q66GR3	1e-159	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A078IWX3	0.0	A0A078IWX3_BRANA; BnaC04g02580D protein
TrEMBL	A0A0D3BPA2	0.0	A0A0D3BPA2_BRAOL; Uncharacterized protein
STRING	Bo4g015860.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-132	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106431535

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]