PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011076001
Common NameGSBRNA2T00011076001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 202aa    MW: 22214.1 Da    PI: 9.8289
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011076001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA23.57.9e-08163184120
                 GATA   1 Cs..nCgttkTplWRrgpdgnk 20 
                          C+  nC++++Tp+WR+gp g+k
  GSBRNA2T00011076001 163 CTnmNCKAINTPMWRKGPLGPK 184
                          55559***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.108.1E-5166182IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEKEFDLTLR LGLPSPTVET HLSLNTLTTD QGNNVDGNRR DNNDNGDIRG RRHILNNNES  60
TNGHEGGRKS VDVNTRYYNL IVNHFAGVGK ALNFKPLPMQ PSPAPVPETP TGSDYVLIDV  120
PAKRAQRNSL AFKNAVDAHE TLGRRWGCSG ACTAGRINEM RKCTNMNCKA INTPMWRKGP  180
LGPKASSLSN LKIFDLLTKF E*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011076001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731931.11e-135GATA transcription factor 29-like
SwissprotQ9LT456e-31GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A078IUT51e-147A0A078IUT5_BRANA; BnaA01g25540D protein
STRINGBra023929.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.12e-28GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]