PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00011181001

Common Name

GSBRNA2T00011181001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 81aa MW: 9304.91 Da PI: 11.0804

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00011181001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.4e-33	15	68	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW+++LH++Fv+aveqLGG+++AtPk +l+lm+v gLt++hvkSHLQ+YR+ GSBRNA2T00011181001 15 PRLRWNSDLHNSFVQAVEQLGGEHRATPKMVLQLMDVRGLTISHVKSHLQMYRS 68 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-31	11	69	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.068	11	71	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-15	13	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-25	15	69	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-7	16	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MKTPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGEHRA TPKMVLQLMD VRGLTISHVK 60 SHLQMYRSMK LEESMQGKNI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-20	16	70	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-20	16	70	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	16	70	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	16	70	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	16	70	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	16	70	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-20	16	70	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-20	16	70	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-20	16	70	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-20	16	70	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-20	16	70	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-20	16	70	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00011181001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022552708.1	2e-49	protein PHOSPHATE STARVATION RESPONSE 1-like
Swissprot	Q700D9	2e-27	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A078JWF3	3e-52	A0A078JWF3_BRANA; BnaCnng71310D protein
STRING	Bo2g104640.1	1e-48	(Brassica oleracea)
STRING	XP_006289552.1	3e-49	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-31	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]