PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011209001
Common NameGSBRNA2T00011209001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 552aa    MW: 61180.1 Da    PI: 7.3973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011209001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08262282526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd+C +aHg
  GSBRNA2T00011209001 262 PCPEFRK-GSCPKGDSCEYAHG 282
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.01E-1332158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1432175IPR020683Ankyrin repeat-containing domain
SMARTSM002488.3E-476106IPR002110Ankyrin repeat
PROSITE profilePS5029714.5376157IPR020683Ankyrin repeat-containing domain
PfamPF136374.9E-877129No hitNo description
CDDcd002042.14E-1278174No hitNo description
SMARTSM0024888111143IPR002110Ankyrin repeat
PROSITE profilePS500888.763111146IPR002110Ankyrin repeat
PROSITE profilePS5010313.976257284IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5257283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-6262283IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5262282IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465292316IPR000571Zinc finger, CCCH-type
SMARTSM0035637292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MCGSESKLCS SRTLTEAESM RQKSQEGVPA ATCLLELAAC DDLPSFRREI EENSLDINEP  60
GFWYCRRVGS KKMGFQERTP LMVAAMYGSI EVLTYIISTG RSDVNRVSGD EKVTALHCAV  120
SACSVSIVQV IKILLDASAS PNTLDANGNK PVDLLVKASR FIPNQTRKAV EILLTGTHGL  180
VGLMEEEEEE EVKSVVSKYP ADASLPDINE GVYGTDEFRM FSFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYPYTC VPCPEFRKGS CPKGDSCEYA HGVFESWLHP GQYRTRLCKD  300
ETGCARRVCF FAHRRDELRP VNASTGSAMV SPQSPMGDNG VPLSPRNVGL WQNTPPPLQL  360
NGSRLKSSLS ARDMDVEMEL RLRGFDGHRL NDSVMSPSRH SQMNHYPSSP VRQAPPQRFE  420
SSAAMAAAVM NARSSAFAKR SLSFKPAPVA SNVSDWGSPN GKVEWGMQRE EMNKMRRSVS  480
FGINGNNNNN VSRPVRDYSD EPDVSWVNSL VKDSAQEGAF GLNGAAVRDE FKLPLWAEQM  540
YIDHEKRQPV A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.174660.0root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011209001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143241.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A078IUI50.0A0A078IUI5_BRANA; BnaA05g34540D protein
STRINGBra004982.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]