PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011645001
Common NameGSBRNA2T00011645001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29496.6 Da    PI: 9.1448
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011645001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33.2e-31958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         k ienk+nrqvtfskRrng++KKA+ELSvLCdaeva+i+fss+gklye+ 
  GSBRNA2T00011645001  9 KLIENKINRQVTFSKRRNGLMKKAYELSVLCDAEVALIVFSSRGKLYEFG 58
                         569*********************************************95 PP
2K-box843.3e-2879178699
                K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.....ekelqe 89 
                          +++  e+++a +++qe++kLk+ +e+L r++RhllGedL+++slkeL  Le+qLe +l++ R++K+++++e++e+l+kk     e++l +
  GSBRNA2T00011645001  79 NSRpEESTQACNWCQEVTKLKSHYESLVRTNRHLLGEDLGKMSLKELLGLERQLEAALTTTRKRKTQVMIEEMEDLRKKasyiiERQLGD 168
                          33357888999********************************************************************66666678888 PP

                K-box  90 enkaLrkkle 99 
                          +nk+L+ k++
  GSBRNA2T00011645001 169 INKQLKIKFD 178
                          8888887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.534161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-34289IPR002100Transcription factor, MADS-box
CDDcd002654.96E-43278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-271157IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2883177IPR002487Transcription factor, K-box
PROSITE profilePS5129714.63288183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRGRVEMKL IENKINRQVT FSKRRNGLMK KAYELSVLCD AEVALIVFSS RGKLYEFGSV  60
GVERTIERYH RCYNRSLSNS RPEESTQACN WCQEVTKLKS HYESLVRTNR HLLGEDLGKM  120
SLKELLGLER QLEAALTTTR KRKTQVMIEE MEDLRKKASY IIERQLGDIN KQLKIKFDQA  180
EGLAFKSFQY LWPNTAASVA GDPNNSEFPV QSSSVDCNTE PFLQIGFQQH YYVQGEGSSV  240
SKSNIACKTN FVQDWVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-20169169MEF2C
5f28_B9e-20169169MEF2C
5f28_C9e-20169169MEF2C
5f28_D9e-20169169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143TRKRKT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011645001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133732.10.0PREDICTED: agamous-like MADS-box protein AGL6 isoform X1
RefseqXP_022571764.10.0agamous-like MADS-box protein AGL6 isoform X1
SwissprotP293861e-151AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLA0A078IS510.0A0A078IS51_BRANA; BnaA03g56870D protein
STRINGBra000392.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-154AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]