PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011759001
Common NameGSBRNA2T00011759001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 391aa    MW: 43508.1 Da    PI: 6.5706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011759001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.54.5e-1207139052374
                 GRAS  52 rlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
                           l++s+s++ykal++++ +     e l+++++++e++P++kf++  aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp+
  GSBRNA2T00011759001  71 ELTSSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGYESANGAIAEAVKKERFVHIIDFQISQGGQWVSLIRALGARPGGPPR 157
                          68899*************9...9******************************************************************* PP

                 GRAS 142 lRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                          +RiTg+++p+s+  ++  le +gerL k+Ae  gvpfef+  +a  ++++e+e+L v++gEalaVn+ l lh+++desv++e++rd++L+
  GSBRNA2T00011759001 158 VRITGIDDPRSSfaRQGGLELVGERLGKLAEMYGVPFEFHG-AALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLR 246
                          *********999999**************************.899********************************************* PP

                 GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                          lvk+lsP+vv++veqea++n+++Fl r++e++++y a+f+s+++kl+r+++eri+vE+++l+re+vn+vaceg er+erhe l+kWr+r+
  GSBRNA2T00011759001 247 LVKRLSPNVVTLVEQEANTNTAPFLPRVVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLVACEGVEREERHEPLGKWRSRF 336
                          ****************************************************************************************** PP

                 GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++aGFkp pls+++++++k ll+ ++++ y++ee++g+l+lgWk++pLv+ +aWr
  GSBRNA2T00011759001 337 HMAGFKPFPLSSYVNATIKGLLESYSEK-YTLEERDGALYLGWKNQPLVTSCAWR 390
                          **************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.2031371IPR005202Transcription factor GRAS
PfamPF035141.5E-11771390IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MNLSVQTFDS YCKLESSPGT KSHPCLNNNT SSTTSFSSNG NSSELNHSPE DNNNNYSPLS  60
GSSATNNNEV ELTSSGSSIY KALRCKDPTG PELLTYMHIL YEACPYFKFG YESANGAIAE  120
AVKKERFVHI IDFQISQGGQ WVSLIRALGA RPGGPPRVRI TGIDDPRSSF ARQGGLELVG  180
ERLGKLAEMY GVPFEFHGAA LCCTEVEIEK LGVRNGEALA VNFPLVLHHM PDESVTVENH  240
RDRLLRLVKR LSPNVVTLVE QEANTNTAPF LPRVVETMNH YLAVFESIDV KLARDHKERI  300
NVEQHCLARE VVNLVACEGV EREERHEPLG KWRSRFHMAG FKPFPLSSYV NATIKGLLES  360
YSEKYTLEER DGALYLGWKN QPLVTSCAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-579239075375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.142440.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011759001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527240.0AK352724.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592147.10.0PREDICTED: scarecrow-like protein 5 isoform X1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A078JZZ80.0A0A078JZZ8_BRANA; BnaCnng71600D protein
TrEMBLA0A3P5ZEC70.0A0A3P5ZEC7_BRACM; Uncharacterized protein
STRINGBo6g022330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]