PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00011973001

Common Name

GSBRNA2T00011973001, LOC106372922

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 234aa MW: 27449.3 Da PI: 8.2879

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00011973001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.8	2.9e-25	121	171	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl GSBRNA2T00011973001 121 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIFRWPHRKLKSL 171 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.143	106	193	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-21	124	171	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDPKFLQPLD SMKIENQYET DSLFDMLEKL PPLESLLDTE YLRPDPGLHF EYQYNSFEDF 60 FENIEVNNNT ISSDILMLTQ EPYFSSDSSS PLVVQNNHCP STNERREKKA SKKKNTRAKR 120 QDKLELSEIR KYFDRPIMKA AKELNVGLTV LKKRCRELEI FRWPHRKLKS LNSLISNLKC 180 VGMDQEVKNL EEHRVLIEQE PDAELTDGTK KLRQACFKAK YKRKKSLAND GYY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00011973001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013668636.1	1e-172	protein RKD4
Swissprot	Q9LVU8	1e-108	RKD4_ARATH; Protein RKD4
TrEMBL	A0A078JWS3	1e-171	A0A078JWS3_BRANA; BnaC09g53630D protein
STRING	Bo9g108730.1	1e-169	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	5e-99	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	106372922

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]