PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012053001
Common NameGSBRNA2T00012053001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 540aa    MW: 61353.5 Da    PI: 10.1834
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012053001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-15166217148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                          +g WT+e d+ll ++v ++ g++Wk+Ia++++    k++t+ qc++rw+k+l
  GSBRNA2T00012053001 166 KGGWTPEQDKLLMNGVWRYKGKNWKKIAECVPgrkdKRKTDVQCQHRWLKVL 217
                          688**********************************************986 PP
2Myb_DNA-binding42.21.9e-13223272148
                          TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W +eEd ll ++v+ +  +    W++I++ ++ gR +kqc++rw+++l
  GSBRNA2T00012053001 223 KGPWRKEEDNLLSELVNVFIENdkpKWSKISKQLP-GRIGKQCRERWHNHL 272
                          79**************999888888**********.*************97 PP
3Myb_DNA-binding49.69.2e-16278320145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT eE+++lv+a +  G++ W+ Ia+ ++ gRt++++k++w+
  GSBRNA2T00012053001 278 KTPWTREEELILVQAQRDQGNK-WAEIAKLLP-GRTENNIKNHWN 320
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.809161217IPR017930Myb domain
SuperFamilySSF466896.41E-16164232IPR009057Homeodomain-like
SMARTSM007173.6E-11165219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-18168229IPR009057Homeodomain-like
CDDcd001671.79E-9169217No hitNo description
PfamPF139215.0E-14169234No hitNo description
PROSITE profilePS5129425.579218276IPR017930Myb domain
SMARTSM007172.6E-15222274IPR001005SANT/Myb domain
CDDcd001672.33E-10225272No hitNo description
Gene3DG3DSA:1.10.10.601.0E-23230279IPR009057Homeodomain-like
SuperFamilySSF466899.18E-28252329IPR009057Homeodomain-like
SMARTSM007172.6E-15277325IPR001005SANT/Myb domain
PROSITE profilePS5129419.342277327IPR017930Myb domain
PfamPF002491.1E-13278320IPR001005SANT/Myb domain
CDDcd001675.91E-10280320No hitNo description
Gene3DG3DSA:1.10.10.606.9E-20280325IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MIFQKVTKDI SPVRLVAAGF GVSGSGSGGG SVNEDSCCSF RRRCRCRISY RDRRFYRRQP  60
QDAAFGRCRC RRFLRQRNEQ ELTQNVDTAA AAGTCGNQTN SPIIERESLS EIMAESKHLI  120
RSKSDISAQV TPPTCAIDSQ EYVLLLNLLS SSVCRRISGP TRRSTKGGWT PEQDKLLMNG  180
VWRYKGKNWK KIAECVPGRK DKRKTDVQCQ HRWLKVLNPN LNKGPWRKEE DNLLSELVNV  240
FIENDKPKWS KISKQLPGRI GKQCRERWHN HLNPTIKKTP WTREEELILV QAQRDQGNKW  300
AEIAKLLPGR TENNIKNHWN CSLKRISEHL VTSSPLSGHG PCGSESSFVN KSNMMEIEKA  360
AKSPQRYSLE LTLEPMNWRN TSSSINSLKG DEESTISSSL ESDWLRRNSK VEISITPSSD  420
DHHHKNVWLT PQLTTPSCVK VPLSPETPQS SSAGQEVREI IGRWKMAAST FENTPSIISR  480
TRRKPENDSP FHRCPRTLLS SEEEHSVSNS SSTSPLLMKR NNTCSSLKPL ERRLEFDFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-521693259157MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-521693259157MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012053001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894831e-107AC189483.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB083F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128621.10.0PREDICTED: myb protein-like
SwissprotQ9SPN31e-128MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLA0A078IVP10.0A0A078IVP1_BRANA; BnaA02g36430D protein
STRINGBra008523.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-124myb domain protein 3r2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]