PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00012403001

Common Name

GSBRNA2T00012403001, LOC106377131

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 344aa MW: 38294.9 Da PI: 7.1395

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00012403001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.6	4e-69	113	279	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.........ks 80 r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+ ++a++kr re +s GSBRNA2T00012403001 113 RQGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSATSRetQNAKAKRLREAnggdnddkdRS 202 7899*****************************************************9999988443334444444477777776666 PP DUF702 81 kkqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 + ++ +t+l++a+s++ +e s+ lP+evss+avfrcvrvss+++ +e+e+aYqtav+igGhvfkGiLydqGl++ GSBRNA2T00012403001 203 GGSGSALATRLVNANSNSGFEESQnLPPEVSSPAVFRCVRVSSMENdeDEQEYAYQTAVNIGGHVFKGILYDQGLDQ 279 7778888999999999999987666***************98434556********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-63	116	278	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.6E-27	118	160	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.5E-26	228	277	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MAGFFYLGGR DNINNKQDHH HHVDKDHHQQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ 60 QQEQQQHHVT ASTNLYSFGM VPSSSNNNNN NRSRSLYFNV VSDHEPGGFS VTRQGGMNCQ 120 DCGNQAKKDC PHLRCRTCCK SRGFHCQTHV KSTWVPAAKR RERLAQLASL QHHSATSRET 180 QNAKAKRLRE ANGGDNDDKD RSGGSGSALA TRLVNANSNS GFEESQNLPP EVSSPAVFRC 240 VRVSSMENDE DEQEYAYQTA VNIGGHVFKG ILYDQGLDQD HHHQLDLLAS TATTTNAEEI 300 AAKTAVTVAA NTNNGLMIDP SSLYPSQLNS FIAGTPFFTP PRS*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MAGFFYLGGR DNINNKQDHH HHVDKDHHQQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ  60
QQEQQQHHVT ASTNLYSFGM VPSSSNNNNN NRSRSLYFNV VSDHEPGGFS VTRQGGMNCQ  120
DCGNQAKKDC PHLRCRTCCK SRGFHCQTHV KSTWVPAAKR RERLAQLASL QHHSATSRET  180
QNAKAKRLRE ANGGDNDDKD RSGGSGSALA TRLVNANSNS GFEESQNLPP EVSSPAVFRC  240
VRVSSMENDE DEQEYAYQTA VNIGGHVFKG ILYDQGLDQD HHHQLDLLAS TATTTNAEEI  300
AAKTAVTVAA NTNNGLMIDP SSLYPSQLNS FIAGTPFFTP PRS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.29201	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00012403001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205267	0.0	GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013672765.1	0.0	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A078G1F0	0.0	A0A078G1F0_BRANA; BnaC02g24360D protein
TrEMBL	A0A3N6QBE1	0.0	A0A3N6QBE1_BRACR; Uncharacterized protein
STRING	Bo2g083970.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-157	SHI-related sequence 5

Link Out ? help Back to Top
Entrez Gene	106377131

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]