PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012443001
Common NameGSBRNA2T00012443001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 1003aa    MW: 110874 Da    PI: 8.1675
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012443001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40110186278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          Cqv++C +dls ak+yhrrhkvCevhska++++v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  GSBRNA2T00012443001 110 CQVDNCIEDLSVAKDYHRRHKVCEVHSKATKAIVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 186
                          **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-32103171IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.727107184IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-37108189IPR004333Transcription factor, SBP-box
PfamPF031101.8E-28110183IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.4E-6803907IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.11E-7803896IPR020683Ankyrin repeat-containing domain
CDDcd002046.96E-7806893No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MEEIGPQVAA PVSLHHPMAR KRHPHWLVSS QPQPRNDWNP DMWEWDSQRF EAKPVEAEAN  60
NVNVSHEREG RGLDLNLSGG FNDAPIVTRP NKRVKSGSPG SAGGGNYPKC QVDNCIEDLS  120
VAKDYHRRHK VCEVHSKATK AIVGKQMQRF CQQCSRFHLL SEFDEGKRSC RRRLAGHNRR  180
RRKTQPEEIV APNNTSNNAN MDVMALLTAL ACAQGRNDAK PNGSPAVPQR QQLLQILDKI  240
KALPLPVDLV SKLNNIGVLA RKNLDQPSPM NPQNDMNGVS SPSTMDLLAV LSTTLGSSGP  300
EAIAFLSQGG FGDKDINEET KLTSSDHAIT TNLEKRTLEL TSFGEGERTS SSHPSPSQDS  360
DLHAQDTRPN LSLQLFTSSP EDESQRTVAS SGKYYSSASS NPVEDRSPSS SPVMQEFFPL  420
QTSPETMRSN NNCRNSSPSP KTSCLPLELF GASNRGAAAN PNFNVSRHHQ SGYASSGSDN  480
SPPSLNSDAQ DRTGKIIFKL LGKDPSQLPG TLRTEIYSWL SSIPSEMESY IRPGCVVLSV  540
YVAMSASAWE QLEENLLQRV SSLVQDSEFW SNTRFLVNTG RQLASYKHGE IRLSKSRRTL  600
SSPELITVSP LAVVAGEETT LVVRGRSLTN DGISFRCAHM GNYSSMEVTG TAYRSTKFDE  660
LIVNRFQVKC PSPGSLGRCF VEVENGFRSD SFPLIIASAT ICRELNRLED EFHPNELTEH  720
SSDRPRSREE VVCFLNELGW LFQKKCASEF SLPRFKFLLV CSVERDYSFL VRTLLDMMVE  780
RNLGKDGLMN KESLDMLAEI QLLNRAVKRR NTKMAETLIQ YSVNPTAKKF IFLPNITGPG  840
DITPLHLAAS TSGSDDMIDV LTKDPQEIGL CCWNTLIDAC GQTPFSYAAM RNNHSYNTLV  900
ARKLADKRNG QISLNIENGI DQIGVSKRLS SELKRSCNTC ASVALKYQKK VSGSRRLFPT  960
PVIHSMLAVA TVCVCVCVFM HAFPIVRQGS HFSWGGLDYG SM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30100183184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1804809RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012443001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620809.10.0PREDICTED: squamosa promoter-binding-like protein 16
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLA0A078G1G70.0A0A078G1G7_BRANA; BnaC02g24160D protein
TrEMBLA0A3P6DVZ90.0A0A3P6DVZ9_BRAOL; Uncharacterized protein
STRINGBo2g091010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]