PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00012468001

Common Name

GSBRNA2T00012468001, LOC106379499, LOC106381413

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 322aa MW: 36579.1 Da PI: 6.2724

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00012468001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.5	2.3e-52	21	150	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL+ kv + l +i+evd++++ePw+Lp+++k +e+ewyf+s rd+ky+tg r+nrat++gyWkatgkdk GSBRNA2T00012468001 21 LPPGFRFHPTDEELITFYLASKVFHGGLCG-IHIAEVDLNRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDK 109 79***********************877.78***********9889999******************************* PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 e++s +g+lvg+kktLvfykgrap+g k++Wvmheyrle GSBRNA2T00012468001 110 EIFSGggGGALVGMKKTLVFYKGRAPRGLKSKWVMHEYRLE 150 9878889**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-62	17	171	IPR003441	NAC domain
PROSITE profile	PS51005	58.468	21	171	IPR003441	NAC domain
Pfam	PF02365	1.5E-26	22	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MMLALEDVLS ELAGEVNDRG LPPGFRFHPT DEELITFYLA SKVFHGGLCG IHIAEVDLNR 60 CEPWELPEMA KMGEREWYFY SLRDRKYPTG LRTNRATTAG YWKATGKDKE IFSGGGGGAL 120 VGMKKTLVFY KGRAPRGLKS KWVMHEYRLE TDLSHRHTCK EEWVICRVFN KTGDRKNVGI 180 HNQISYLHNT SLSTTQHHHL ENLPSLLQPS KTLTNFPPLL YYDDTHQNYN DNLLHGISGH 240 NVDELKALIN PVVSQLNEVL FSPESNYYND EDDNFGVKTE QYSNGGNNDL DVRDYLENPL 300 FQEAGYSLLG LSSSPGPRML Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	21	174	15	171	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed at the globular stage, mostly in the apical part of the embryo. During the triangular stage, confined to the boundary of emerging cotyledons. Later restricted to the center of the apical part of the embryo and to seedling apex, at the boundaries of the cotyledon margins and the boundaries between the SAM and the cotyledons. Localized in a one-cell-wide ring at the boundary between trichomes or lateral roots and epidermis. Accumulates at the boundaries between leaf primordia and the shoot meristem and between floral primordia and the inflorescence meristem. Found in the adaxial axils of secondary inflorescences and pedicels, and in axiallary buds. In flowers, expressed in a ring at the bases of sepals and petals. In carpels, confined to the boundaries between ovule primordia. In ovules, localized in a ring at the boundary between the nucellus and the chalaza. In the mature embryo sac, detected in the two polar nuclei of the central cell. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.
Uniprot	TISSUE SPECIFICITY: In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269\|PubMed:12837947}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00012468001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013674887.1	0.0	protein CUP-SHAPED COTYLEDON 3-like
Refseq	XP_013676762.1	0.0	protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	1e-179	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A078G4Q7	0.0	A0A078G4Q7_BRANA; BnaC02g24050D protein
STRING	Bo2g089890.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-171	NAC family protein

Link Out ? help Back to Top
Entrez Gene	106379499 \| 106381413

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]