PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00012594001

Common Name

GSBRNA2T00012594001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 369aa MW: 40489.8 Da PI: 8.8719

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00012594001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	1e-16	55	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+te d l ++v++lG+++W++I+r ++ gR++k+c++rw + GSBRNA2T00012594001 55 KGPWSTEQDAVLTRLVNKLGPRNWTLISRGIP-GRSGKSCRLRWCNQ 100 79****************************.*********985 PP
2	Myb_DNA-binding	54	3.9e-17	107	150	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T eE+ ll a++ +G++ W+ Ia+ ++ gRt++ +k++w++ GSBRNA2T00012594001 107 RKPFTDEEENLLMSAHAVHGNK-WSVIAKLLP-GRTDNAIKNHWNS 150 789*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.629	50	101	IPR017930	Myb domain
SuperFamily	SSF46689	3.41E-29	52	148	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	54	103	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-15	55	100	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-23	56	108	IPR009057	Homeodomain-like
CDD	cd00167	1.61E-12	57	99	No hit	No description
PROSITE profile	PS51294	25.502	102	156	IPR017930	Myb domain
SMART	SM00717	1.6E-15	106	154	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-15	107	150	IPR001005	SANT/Myb domain
CDD	cd00167	4.85E-12	109	149	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.2E-24	109	155	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MNSEIVSQMP PATPSTPFDD SSEYAINAAV DLELALAVRE VGGDSNGGCG RSKAKGPWST 60 EQDAVLTRLV NKLGPRNWTL ISRGIPGRSG KSCRLRWCNQ LDPCLKRKPF TDEEENLLMS 120 AHAVHGNKWS VIAKLLPGRT DNAIKNHWNS ALKRKHADLW NSHHHSISNA SSSRKEETNY 180 HPPLVSTDVK MEGEASKTRE GKCCKPGVYR PVARLGAFSV YKPGYMNQRV APCEGPLVQA 240 AGTDSLGGQF LQSLCYQPNV PSRCGHGCCN QQPEKRLLSS VLGPEFVDYE GPSIVGLDQE 300 LVSIATDLNN IAWIRSGLNN SYAREVGQRL NADSRFHFEH ARARGKFTGM VNNGMPSQML 360 RQDLRALI*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MNSEIVSQMP PATPSTPFDD SSEYAINAAV DLELALAVRE VGGDSNGGCG RSKAKGPWST  60
EQDAVLTRLV NKLGPRNWTL ISRGIPGRSG KSCRLRWCNQ LDPCLKRKPF TDEEENLLMS  120
AHAVHGNKWS VIAKLLPGRT DNAIKNHWNS ALKRKHADLW NSHHHSISNA SSSRKEETNY  180
HPPLVSTDVK MEGEASKTRE GKCCKPGVYR PVARLGAFSV YKPGYMNQRV APCEGPLVQA  240
AGTDSLGGQF LQSLCYQPNV PSRCGHGCCN QQPEKRLLSS VLGPEFVDYE GPSIVGLDQE  300
LVSIATDLNN IAWIRSGLNN SYAREVGQRL NADSRFHFEH ARARGKFTGM VNNGMPSQML  360
RQDLRALI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-36	55	155	7	107	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10982	2e-39	leaf\| microspore-derived embryo\| root\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Required for male gametophyte (pollen) development. {ECO:0000269\|PubMed:22101548}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00012594001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269\|PubMed:15258262}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013748036.1	0.0	transcription factor MYB25
Swissprot	O04192	1e-135	MYB25_ARATH; Transcription factor MYB25
TrEMBL	A0A078G550	0.0	A0A078G550_BRANA; BnaC04g05500D protein
STRING	Bo4g025810.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5638	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G39880.1	1e-134	myb domain protein 25

Link Out ? help Back to Top
Entrez Gene	106450812

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]