PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00012793001

Common Name

GSBRNA2T00012793001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 180aa MW: 20838.3 Da PI: 10.1514

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00012793001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.2	1.1e-06	19	66	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ n rE+ RR r+++ f+ L +++ + +l + Le+A+ Y+ +L GSBRNA2T00012793001 19 REQRNLREQERRMRMKHLFNILSSHVSPT-----HRLPVPQLLEQATSYMIQL 66 8889********************996.....59***********9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-11	17	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.033	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-7	19	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0052	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MDRERGREVV GEGSSMSSRE QRNLREQERR MRMKHLFNIL SSHVSPTHRL PVPQLLEQAT 60 SYMIQLKEKV NYLKEKKMTL LGEMGKHSEG LSSSLLPKLS IYSRDSTIQM NLLIDLNMKR 120 VMLHQLLSVF EEEGAQVMNV NTQKLNDRMI IYTIIAQAII SRIGIDPSRI EERVRDIIF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00012793001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144433.1	1e-114	PREDICTED: uncharacterized protein LOC103868087
Swissprot	F4I4E1	9e-88	BH167_ARATH; Transcription factor bHLH167
TrEMBL	A0A078G7N8	1e-125	A0A078G7N8_BRANA; BnaC08g14400D protein
STRING	Bo8g059520.1	1e-112	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	1e-64	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]