PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013424001
Common NameGSBRNA2T00013424001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 256aa    MW: 29725.8 Da    PI: 6.5121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013424001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.32.8e-1058938128
                  NAM  38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                          d+++ +P++      ++e+  + F+   +++a   r+     sg W+  g+dk ++++ +g+  g kk+L f  +++ +g k +Wvm++y
  GSBRNA2T00013424001   5 DVFTKNPSEVF----ESENPFFVFVYP-RTEA-CGRTDG-CGSGGWRIIGHDKLIKQEdTGKILGFKKILKFCGETKARGYKRTWVMEQY 87 
                          66666666663....122333333333.3333.345555.47899***********99778889*********99*************** PP

                  NAM 127 rl 128
                          rl
  GSBRNA2T00013424001  88 RL 89 
                          98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.7671107IPR003441NAC domain
SuperFamilySSF1019415.62E-193105IPR003441NAC domain
PfamPF023655.0E-51989IPR003441NAC domain
PROSITE profilePS510057.065102253IPR003441NAC domain
SuperFamilySSF1019411.83E-13148251IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEDRDVFTKN PSEVFESENP FFVFVYPRTE ACGRTDGCGS GGWRIIGHDK LIKQEDTGKI  60
LGFKKILKFC GETKARGYKR TWVMEQYRLP SKWNPKQDHV VCKIQLLFQT EISFLLAKHF  120
SCSSDPLPAT QSLTAYGIRL ANPQDDGAYY LQVIFDSGGN EWPSYVTNDV YCVHPSTLVD  180
HEDKRIMEED NAIYSMSHEV MGYKRVFKFY EEDKGRYFDI VNGEEVLRTW IMEEYRLVED  240
AMKDKVLCVI KRGRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013424001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728371.11e-178uncharacterized protein LOC106432073
TrEMBLA0A078IVW50.0A0A078IVW5_BRANA; BnaC01g43150D protein
STRINGBo1g091800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-96NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]