PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00013502001

Common Name

GSBRNA2T00013502001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 219aa MW: 24332.1 Da PI: 10.5578

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00013502001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.1	7.2e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT +E+ l+ +v ++G+g W+tI + k R+ ++k++w++ GSBRNA2T00013502001 5 KQKWTSQEETALKAGVLKHGTGKWRTILSDPEftsilKSRSNVDLKDKWRN 55 79***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.95	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.43E-15	2	59	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-5	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-13	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-7	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	9.61E-19	6	56	No hit	No description
SMART	SM00526	2.0E-5	115	180	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	14.569	117	185	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.74E-9	119	190	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.9E-8	120	190	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	5.7E-5	120	178	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MGAPKQKWTS QEETALKAGV LKHGTGKWRT ILSDPEFTSI LKSRSNVDLK DKWRNISVTA 60 MYGSRKKAKL ALKRTPSSHD DDNATALTIV AIANGAQHIS PLPPALSCAP PRDFEGLFTS 120 VDKMILEAIA NFNRHLGPDG KSILLYVEER HNMQPDMKRL VTSRLKHLVN VGTIVKIKHR 180 YRICRNAAEQ SSPQLFLEGN KESDLTRSQV VKPDNVKV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:15060584}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00013502001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745488.1	1e-152	telomere repeat-binding factor 3-like
Swissprot	Q9M2X3	2e-99	TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBL	A0A078JZZ9	1e-161	A0A078JZZ9_BRANA; BnaCnng72020D protein
STRING	Bra029978.1-P	1e-157	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3809	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	4e-94	telomere repeat binding factor 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]