PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013558001
Common NameGSBRNA2T00013558001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 247aa    MW: 27185.2 Da    PI: 6.6326
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013558001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-1499143347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  GSBRNA2T00013558001  99 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 143
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.4632984IPR017884SANT domain
SMARTSM007171.5E-63082IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-93387IPR009057Homeodomain-like
CDDcd001673.11E-63379No hitNo description
PROSITE profilePS5129417.66592148IPR017930Myb domain
TIGRFAMsTIGR015571.8E-1795147IPR006447Myb domain, plants
SuperFamilySSF466895.98E-1795148IPR009057Homeodomain-like
SMARTSM007172.1E-1296146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-1298142IPR009057Homeodomain-like
CDDcd001671.11E-1199144No hitNo description
PfamPF002493.9E-1399143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEILRPTTSH VSGGSWLMED TKSNVATARE SATWTAAENK AFENALAVYD DNTPDRWQKV  60
AAVIPGKRVS DVIRQYNELE ADVSNIEAGG CNGLKPGVPW TEEEHKLFLM GLKKYGKGDW  120
RNISRNFVIT RTPTQVASHA QKYFIRQHSG GKDKRRASIH DITTVNLEDE ASLETNKNSL  180
VGREQHSRLG GFPWSQMDNT GTHADAFNIT IGNALSGVNS YGQAMVGPFN TTADSCYDAQ  240
STMFQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.55451e-145seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013558001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2412069e-43HQ241206.1 Caulanthus amplexicaulis var. amplexicaulis isolate DIV1 EPIC marker CAA genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120398.11e-171PREDICTED: transcription factor DIVARICATA
RefseqXP_013716571.11e-171transcription factor DIVARICATA-like
RefseqXP_022549041.11e-171transcription factor DIVARICATA-like
SwissprotQ8S9H72e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A078IVZ80.0A0A078IVZ8_BRANA; BnaA10g29180D protein
STRINGBra002610.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-148Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]