PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013604001
Common NameGSBRNA2T00013604001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 137aa    MW: 15864 Da    PI: 6.5133
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013604001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-15896197
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                         ffk l     + s+ l++p  f+ ++ +g +e + t +l++  s  +Wevk+  + + +   lt+GWkeF+ a++L  gD+++F+ ++++ f
  GSBRNA2T00013604001  8 FFKPL--VPGFHSH-LTIPVAFFLKYiEGRNEHKNTARLRSdASKITWEVKI--EDG-Q--KLTDGWKEFAIAHDLHIGDILIFRQEKDMAF 91
                         56666..4456666.************666667779***9968889******..333.2..4***********************7776777 PP

                         ..EEEEE CS
                   B3 91 elvvkvf 97
                           +v+++
  GSBRNA2T00013604001 92 --HVTLL 96
                         ..77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-214112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.914599IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-185106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-14696No hitNo description
SMARTSM010198.4E-20899IPR003340B3 DNA binding domain
PfamPF023625.4E-111693IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MRMPNKRFFK PLVPGFHSHL TIPVAFFLKY IEGRNEHKNT ARLRSDASKI TWEVKIEDGQ  60
KLTDGWKEFA IAHDLHIGDI LIFRQEKDMA FHVTLLGPSG CEFQYESCSE EENNLGENIP  120
KKKNLEREAE FSSLDPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013604001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140575.12e-91PREDICTED: B3 domain-containing protein REM14-like isoform X1
SwissprotQ8GYM44e-61REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A078IST54e-98A0A078IST5_BRANA; BnaA04g28140D protein (Fragment)
TrEMBLA0A3P6CYM01e-89A0A3P6CYM0_BRACM; Uncharacterized protein
STRINGBra032075.1-P3e-86(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-63B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]