PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013885001
Common NameGSBRNA2T00013885001, LOC106393529
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 156aa    MW: 17387.6 Da    PI: 8.303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013885001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.7e-13101149153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                          +++kGVr ++ +g+W AeI+dps+   ++r +lg+f t ++A + +++a+ +l
  GSBRNA2T00013885001 101 KKHKGVRKKP-SGKWSAEIWDPSI---KARRWLGTFPTYDMAVQSYEEAKYEL 149
                          589****999.7*********965...69********************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-18101145No hitNo description
PROSITE profilePS5103217.029102155IPR001471AP2/ERF domain
SMARTSM003803.6E-9102155IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-11102149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-15102151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MNNDQFDPTR MNNSGNVQSY VQNENFTPVS QPSYLTRDQE HEIIVSTLRQ VISSPGGDTS  60
SSYWIASEVL PPPDAGPCPI CGVTGCYGCA FPRPVEIKKE KKHKGVRKKP SGKWSAEIWD  120
PSIKARRWLG TFPTYDMAVQ SYEEAKYELA VRRSA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013885001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594760.11e-114PREDICTED: putative ethylene-responsive transcription factor ERF121
RefseqXP_013689676.11e-114putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC91e-67EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A078JY291e-112A0A078JY29_BRANA; BnaC07g48550D protein
TrEMBLA0A0D3D8981e-112A0A0D3D898_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EQN51e-112A0A3P6EQN5_BRAOL; Uncharacterized protein
STRINGBo7g064150.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.15e-60ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]