PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013972001
Common NameGSBRNA2T00013972001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 454aa    MW: 50012.6 Da    PI: 6.3387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013972001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-1774120148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEde l +av ++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  GSBRNA2T00013972001  74 KGGWTPEEDETLRQAVCKFNGKSWKKIAEFFP-DRTEVQCLHRWQKVL 120
                          688*****************************.************986 PP
2Myb_DNA-binding57.14.1e-18126172148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT++Ede+++++v+++G+  W+ I+  ++ gR +kqc++rw+++l
  GSBRNA2T00013972001 126 KGPWTQQEDEKIIELVEKYGPAKWSIISDSLP-GRIGKQCRERWHNHL 172
                          79******************************.*************97 PP
3Myb_DNA-binding582.2e-18178221146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WT+eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
  GSBRNA2T00013972001 178 KDAWTPEEELALMNAHRVHGNK-WAEIAKVLP-GRTDNSIKNHWNS 221
                          689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1669120IPR017930Myb domain
SuperFamilySSF466891.15E-1671129IPR009057Homeodomain-like
SMARTSM007177.3E-1473122IPR001005SANT/Myb domain
PfamPF002491.7E-1574120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-2376132IPR009057Homeodomain-like
CDDcd001672.36E-1277120No hitNo description
PROSITE profilePS5129431.304121176IPR017930Myb domain
SuperFamilySSF466894.12E-32123219IPR009057Homeodomain-like
SMARTSM007172.6E-17125174IPR001005SANT/Myb domain
PfamPF002493.4E-17126172IPR001005SANT/Myb domain
CDDcd001673.50E-14128172No hitNo description
Gene3DG3DSA:1.10.10.602.5E-26133179IPR009057Homeodomain-like
SMARTSM007176.8E-17177225IPR001005SANT/Myb domain
PROSITE profilePS5129422.885177227IPR017930Myb domain
PfamPF002491.0E-16178221IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-23180226IPR009057Homeodomain-like
CDDcd001671.39E-12180223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MSCDLNPPPD EEVKMEDECV ENKQSRAAAS CSSVSEGSSG GSSSFLKSPP AVASPPPTAS  60
PTPRRTSGPI RRAKGGWTPE EDETLRQAVC KFNGKSWKKI AEFFPDRTEV QCLHRWQKVL  120
NPDLIKGPWT QQEDEKIIEL VEKYGPAKWS IISDSLPGRI GKQCRERWHN HLNPGINKDA  180
WTPEEELALM NAHRVHGNKW AEIAKVLPGR TDNSIKNHWN SSLKKKSEFL LANGSLPPAA  240
ATNGVPSCFQ RRLSVSVAQT SSGRTQINKP REEVAAASPM AGFEEYVRSS QLPKPEPSPE  300
DHHMASEADK QRMYGYECGC SPSASSPVIF FTPPPPSREE YSSNGSAPRS PESFLREAAR  360
TFPNTPSIFR KRRRKAVVVP DNNKTDEEEA AKEVVDEKVN GISETTDCEE KENSGSNAYN  420
LSPPGREVDD ETKSSEKDKL LDGGDSQLSG QEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-69732265158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-69732265158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369373RKRRR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013972001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2141171e-150AF214117.2 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R3) mRNA, complete cds.
GenBankAY1426491e-150AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBankAY5196511e-150AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123357.10.0PREDICTED: transcriptional activator Myb-like isoform X2
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A078IWK50.0A0A078IWK5_BRANA; BnaAnng13080D protein
STRINGBra034067.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.10.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]