PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014031001
Common NameGSBRNA2T00014031001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 128aa    MW: 14511.7 Da    PI: 9.5036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014031001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.51.2e-10230100128
                  NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                          +g+kkt+vfy+g+ap+g+kt+W m+ey++
  GSBRNA2T00014031001   2 IGVKKTMVFYTGKAPTGRKTKWKMNEYKA 30 
                          79*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.264155IPR003441NAC domain
PfamPF023652.9E-4229IPR003441NAC domain
SuperFamilySSF1019419.42E-12255IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MIGVKKTMVF YTGKAPTGRK TKWKMNEYKA VDETFNVSIV PKLRHEFSLC RVYVTSGNSR  60
AFDRRPMGIF QAERMLTRDV AVGERSVRVE SSPEASMSGG HGYLFVNGEM VDGLTEPIWE  120
WEQLSWP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014031001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610715.12e-89PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR33e-64NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A078K0K17e-90A0A078K0K1_BRANA; BnaUnng04300D protein
STRINGBo9g148540.19e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-66NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]