PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014621001
Common NameGSBRNA2T00014621001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21957.6 Da    PI: 4.9725
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014621001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.3e-121249238
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                          ie k+ ++v f+kRrng++ KA EL+ L   a++a++
  GSBRNA2T00014621001 12 EIEKKTVKSVAFTKRRNGLFRKAAELCLLSsSAQIAIL 49
                         79***************************725788876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-9364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.199351IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-8525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-14578IPR002100Transcription factor, MADS-box
PfamPF003191.2E-101356IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGGTKRKIKI EEIEKKTVKS VAFTKRRNGL FRKAAELCLL SSSAQIAILA TPPSTNSHAA  60
FYSFGHSSVD HVVSSLLNDR CPLPTEQENN SRLGFWWEDE GFNRSENIDE LKEATDAVSR  120
MLNNLRLRLD ALKSNQSGGA LVIHQEEVLH ICDTETNNNE EMTNQITRLE GASGILVENV  180
EDSLPNDGIF GDAKIDTL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014621001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123497.11e-145PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6333e-42AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A078IXB91e-144A0A078IXB9_BRANA; BnaA09g53170D protein
TrEMBLM4FIN61e-144M4FIN6_BRARP; Uncharacterized protein
STRINGBra040965.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.11e-65AGAMOUS-like 55
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]